Rune Chart
Different weapons accept the same Runes differently. Even two different copies of the same item might react to Runes differently.
However, any weapon that accepts Runes will accept them in one of ten ways. Which set of runes any weapon accepts is randomly determined when the item pops. So, to determine what Runes will have a desired affect on any given weapon, first delve the item a couple times to see which set of runes you're dealing with. Once you figure out which one of the ten sets of Runes this weapon is accepting, you can safely Rune the item without fear of accidentally applying the wrong Rune.
Rune Chart
Rune: | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | ----------------+-----+-----+-----+-----+-----+-----+-----+-----+-----+-----+ Weakness | zor | era | boh | vi | chy | to | ka | rin | yal | nol | Sickliness | era | to | ka | zor | boh | nol | rin | yal | vi | chy | Confusion | vi | zor | chy | yal | nol | era | boh | ka | rin | to | Vanquishing | rin | yal | to | ka | era | vi | nol | chy | boh | zor | Striking | ka | rin | era | boh | zor | yal | to | nol | chy | vi | Battle | boh | ka | zor | chy | vi | rin | era | to | nol | yal | Defense | chy | boh | vi | nol | yal | ka | zor | era | to | rin | Invulnerability | nol | chy | yal | to | rin | boh | vi | zor | era | ka | None | to | vi | nol | rin | ka | chy | yal | boh | zor | era | None | yal | nol | rin | era | to | zor | chy | vi | ka | boh |
Rune Set One
Ka - Rune of Vanquishing Yal - Rune of Confusion Vi - Rune of Weakness Rin - Nothing Boh - Rune of Striking Chy - Rune of Battle Era - Nothing To - Rune of Invulnerability Nol - Rune of Defense Zor - Rune of Sickliness
Rune Set Two
Ka - Rune of Sickliness Yal - Rune of Invulnerability Vi - Rune of Defense Rin - Nothing Boh - Rune of Weakness Chy - Rune of Confusion Era - Rune of Striking To - Rune of Vanquishing Nol - Nothing Zor - Rune of Battle
Rune Set Three
Ka - Rune of Invulnerability Yal - Rune of Battle Vi - Rune of Striking Rin - Rune of Defense Boh - Nothing Chy - Rune of Sickliness Era - Nothing To - Rune of Confusion Nol - Rune of Weakness Zor - Rune of Vanquishing
Rune Set Four
Ka - Rune of Confusion Yal - Rune of Sickliness Vi - Nothing Rin - Rune of Weakness Boh - Nothing Chy - Rune of Vanquishing Era - Rune of Defense To - Rune of Battle Nol - Rune of Striking Zor - Rune of Invulnerability
Rune Set Five
Ka - Rune of Defense Yal - Rune of Striking Vi - Rune of Vanquishing Rin - Rune of Battle Boh - Rune of Invulnerability Chy - Nothing Era - Rune of Confusion To - Rune of Weakness Nol - Rune of Sickliness Zor - Nothing
Rune Set Six
Ka - Rune of Battle Yal - Rune of Vanquishing Vi - Nothing Rin - Rune of Striking Boh - Rune of Defense Chy - Rune of Invulnerability Era - Rune of Weakness To - Rune of Sickliness Nol - Nothing Zor - Rune of Confusion
Rune Set Seven
Ka - Nothing Yal - Rune of Defense Vi - Rune of Battle Rin - Rune of Invulnerability Boh - Rune of Sickliness Chy - Rune of Weakness Era - Rune of Vanquishing To - Nothing Nol - Rune of Confusion Zor - Rune of Striking
Rune Set Eight
Ka - Rune of Striking Yal - Nothing Vi - Rune of Confusion Rin - Rune of Vanquishing Boh - Rune of Battle Chy - Rune of Defense Era - Rune of Sickliness To - Nothing Nol - Rune of Invulnerability Zor - Rune of Weakness
Rune Set Nine
Ka - Nothing Yal - Rune of Weakness Vi - Rune of Sickliness Rin - Rune of Confusion Boh - Rune of Vanquishing Chy - Rune of Striking Era - Rune of Invulnerability To - Rune of Defense Nol - Rune of Battle Zor - Nothing
Rune Set Ten
Ka - Rune of Weakness Yal - Nothing Vi - Rune of Invulnerability Rin - Rune of Sickliness Boh - Rune of Confusion Chy - Nothing Era - Rune of Battle To - Rune of Striking Nol - Rune of Vanquishing Zor - Rune of Defense